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One or more keywords matched the following properties of Ruthenburg, Alexander J.
PropertyValue
keywords Chromatin Associated RNA
overview The unifying theme of my lab is the elucidation of molecular mechanisms underlying management chromatin, the physiological form of the genome. In particular, we are interested in how post translational modifications to histones, newly appreciated DNA modifications and noncoding RNA can control chromatin structure. Our research spans several traditional disciplines, ranging from discovery biochemistry and genome-scale measurements to mechanistic characterization with biophysical methods coupled with X-Ray structure to address fundamental questions in chromatin biology. We have pioneered new technologies to make quantitative local measurements of chromatin components. Projects ideally will transition from discovery biology to detailed molecular and structural investigation.
One or more keywords matched the following items that are connected to Ruthenburg, Alexander J.
Item TypeName
Concept RNA, Bacterial
Concept RNA Splicing
Concept RNA
Concept DNA-Directed RNA Polymerases
Concept RNA Interference
Concept RNA-Binding Proteins
Concept RNA, Messenger
Concept RNA, Untranslated
Concept Sequence Analysis, RNA
Academic Article How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers.
Academic Article Crystal structure of Staphylococcus aureus tRNA adenosine deaminase TadA in complex with RNA.
Academic Article Multivalent engagement of chromatin modifications by linked binding modules.
Academic Article Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions.
Academic Article Regulation of MLL1 H3K4 methyltransferase activity by its core components.
Academic Article Recombinant antibodies to histone post-translational modifications.
Academic Article Calibrating ChIP-Seq with Nucleosomal Internal Standards to Measure Histone Modification Density Genome Wide.
Academic Article Nuclear Fractionation Reveals Thousands of Chromatin-Tethered Noncoding RNAs Adjacent to Active Genes.
Academic Article Chromatin-enriched lncRNAs can act as cell-type specific activators of proximal gene transcription.
Grant Discovery of New Epigenetic Pathways involved in stem sell maintenance
Grant Biochemical discovery of new epigenetic pathways linked to leukemia
Grant Calibrated ChIP-seq: determining local histone modification density genome-wide
Academic Article Transcription-factor-dependent enhancer transcription defines a gene regulatory network for cardiac rhythm.
Academic Article Facile target validation in an animal model with intracellularly expressed monobodies.
Academic Article Native internally calibrated chromatin immunoprecipitation for quantitative studies of histone post-translational modifications.
Academic Article Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq.
Academic Article Profiling lariat intermediates reveals genetic determinants of early and late co-transcriptional splicing.
Concept RNA, Long Noncoding
Academic Article Merging short and stranded long reads improves transcript assembly.
Search Criteria
  • RNA
  • modification